Post-generator
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Many languages use a post-generator FST to fix minor orthographical issues. This FST is in lttoolbox format and is run by lt-proc with the -p or --post-generation switch. An example of such an orthographical issue is the "a" vs "an" difference in English. The english generator will output ~a, and the post-generation FST changes that to a or an depending on the following word.
The source dictionary is typically named something like apertium-cat.post-cat.dix, while the compiled file gets a name like spa-cat.autopgen.bin.
Here's a minimal example:
<?xml version="1.0" encoding="UTF-8"?>
<dictionary>
<alphabet/>
<sdefs>
<sdef n="n" c="Noun"/>
</sdefs>
<pardefs>
<pardef n="vocals">
<e>
<i>a</i>
</e>
<e>
<i>e</i>
</e>
<e>
<i>i</i>
</e>
<e>
<i>o</i>
</e>
<e>
<i>u</i>
</e>
</pardef>
</pardefs>
<section id="main" type="standard">
<e>
<p>
<l><a/>a<b/></l>
<r>an<b/></r>
</p>
<par n="vocals"/>
</e>
</section>
</dictionary>